rs31898346 SNP Detail

Summary

• ID
  rs31898346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGT ACCACTCGGC CAAAAACAGC
  R
  GTTATTTATA CAGCTGAAGA AAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46226165	mCV22601591	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss47601656	NES11425500	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G		A	G	G	A		A	A	A		G
ss145053612	ENSMUSSNP7195148	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss322686838	CHEV_8_69037139	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31898346					SNP	A	A	A	G	A	G	G	A	A	G	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601656	NES11425500	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	857 bp distal
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	1497 bp downstream
Tssr77576	transcription start site region 77576	1476 bp downstream