rs31899002 SNP Detail

Summary

• ID
  rs31899002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134095292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCCCCA GCCCCCACCC
  CAACGAATCA TACTTAACTG GTAGCTGGGA TGTTTAAATA AAATATTTGT ACTCGTCAGA
  CAAAAGCTGA TTTTTGATGA TATTTTCATT ATTCTTTACT TTAAAGGATT CTTACTATAT
  GTCCTTAAAC AATATTGACT TTTTTTCCCT TGTCCATTTT CCTAGTCTCA GCAAATAGTG
  R
  GGCCAAATGC ATAGTCATTG AATCAAAGAA AAATCATTTA TCAAGGTCTT CAAGTCATTT
  TCTCACTCGC TGGCCCAATA ATTATGAATT ATCTGCAGTC TGTCAGGTAT CGTGCTCAGA
  GACTGTAATC AATACAGCCT TGCTCAGTGC CTCCACATTG TTAGCTGATC TGAGAGAGGA
  AGATTACACT GGAAAGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48101335	NES11850580	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31899002					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48101335	NES11850580	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134095292 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	1121 bp proximal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	1155 bp proximal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	851 bp proximal