rs31899370 SNP Detail

Summary

• ID
  rs31899370
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191709571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGGGTCAGCC CTCCCTCACC AGCTAATACT GCTTCAGGCC AAGAGGCTTA GGTGGGTCTC
  CATGACAACC GCAGCTGGCC TGCCTCCAGG TTCTGCAGGG AGCTGTGTCT CAGCTCTGGG
  GACCTACACA TACTCCACAA ACACCAGCCC AGCTGGGTCC CTCCTCCAGT TGGTGCCTCC
  AGTACAACTT CTCAAAGAGG AAGAGCAGAA AGCACAGGAG GCAGCCAGCA GTGGAAGAGG
  CAGAGGGCGG CCGAGGATGG AGCTCACTCT TCAACTCCTG CCAGTTTGCC GCTCAACTTT
  M
  TACTTTCCCT AGAAAAGATC AAGGCTCTCT TCTCCTAGAG TGTGAAGCAG AAAGCAGGAC
  CCCTACAGTG ATAGTGGCCC TGAAGGAGGT GGACCTAAGG TAAGAGGGGA ATCTCCCCAG
  AAGTGGCAGC TTCCTGCACT TACAGTAGAC AGCTAGCCAC ACTTGGCTCT GAGCTTGGAA
  GGCCACCTGG GATCCGGAAA GTAAGCTGGA CCCAGGACCC AGGCGGCCAT GGGAGGCCCC
  TCAATCCTCA CTGGTCAAAG ATGAGCAGAC TCGGGCCTGA TCCTGAGGGT GCACAACCTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45082646	mCV24805371	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31899370					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191709571 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70525	predicted gene, 70525			1269 bp downstream
Gm70534	predicted gene, 70534			within coordinates
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			227 bp distal
Rr426277	regulatory region 426277			45 bp distal
Rr426278	regulatory region 426278			1677 bp proximal
Tssr10797	transcription start site region 10797			221 bp downstream
Tssr10798	transcription start site region 10798			210 bp downstream
Tssr10799	transcription start site region 10799			165 bp downstream
Tssr10800	transcription start site region 10800			637 bp upstream
Tssr10801	transcription start site region 10801			674 bp upstream