rs31899969 SNP Detail

Summary

• ID
  rs31899969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134095502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTCATT GAATCAAAGA
  AAAATCATTT ATCAAGGTCT TCAAGTCATT TTCTCACTCG CTGGCCCAAT AATTATGAAT
  TATCTGCAGT CTGTCAGGTA TCGTGCTCAG AGACTGTAAT CAATACAGCC TTGCTCAGTG
  CCTCCACATT GTTAGCTGAT CTGAGAGAGG AAGATTACAC TGGAAAGTAG CATTGTGGTC
  Y
  GTTTTGATCC TGGAGCTGGG ATTTTAAAGC ATTAGAAATG CCTGCTATCA CTAATGTCAA
  ATCCGACTAG GCAGACTTGG TGCTATTTCG GAGTAAGGCA GAAGTAAACC ATTATTAGTA
  AGTGTTTGAG AGGTGGGGGC TGGGGGATGC CCCACTGGTG AAATGTTTCC TGGCCAAGTA
  TGAGGATCCT CAGAACCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48101343	NES11850584	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31899969					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48101343	NES11850584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134095502 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	911 bp proximal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	945 bp proximal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	641 bp proximal
Rr639574	regulatory region 639574	1999 bp proximal