rs31899973 SNP Detail

Summary

• ID
  rs31899973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:134095562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT GCCTGCTATC ACTAATGTCA
  W
  ATCCGACTAG GCAGACTTGG TGCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48101347	NES11850586	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	T	A	T	T	A		A	T	A	A		A
ss133771321	ENSMUSSNP5249457	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321976670	CHEV_6_134068617	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31899973					SNP	A	T	T	T	A	T	A	T	T	A	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48101347	NES11850586	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134095562 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	851 bp proximal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	885 bp proximal
Etv6	ets variant 6	Intron
Rr639573	regulatory region 639573	581 bp proximal
Rr639574	regulatory region 639574	1939 bp proximal