rs31900460 SNP Detail

Summary

• ID
  rs31900460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATAGCTC AACACTAAAT
  TACCAGAGCA TCAGTGGCTA GGGTGGGGTG CAGGAGTTCT AGATTAGATA GGGCAGCATA
  GGGACACTAC TTCTCTTTCT TTAAAAGGAG AAAAATATTC GAATATTATC AGCTATATCA
  TCTAATAGAA TTCCACATTA CTCCTATACT TCGCTTTAAA AATATCCCTG GCGTTCAGCC
  Y
  TTTCTTTTAA GTTCTGCGAT TGAACATTCT GAGTACACCC TTTCTAGTCC TGAAGTCAAA
  ATGTCACCAG CCTTAAAGCT TTTCTGAAAC CATTGGCCGA TGTCTAAGTC TCACTCTGGC
  TCACTTCGCA GGACCTTTCC TTCTGTCCCC GCAAAGCACT GCGCACAGAA GGAAACCACT
  GCCCAGTGAA GATACTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47101993	NES11235538	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss324050327	CHEV_12_58331029	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31900460					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47101993	NES11235538	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	7 bp proximal
Mipol1	mirror-image polydactyly 1	385 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	370 bp upstream
Rr265473	regulatory region 265473	within coordinates
Rr403305	regulatory region 403305	335 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	364 bp upstream
Tssr113520	transcription start site region 113520	423 bp upstream
Tssr113521	transcription start site region 113521	472 bp upstream