rs31900463 SNP Detail

Summary

• ID
  rs31900463
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57277605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGACCGG GAGCGGCTGG
  GGGAGGGGGG AGAACCTCAG GGTGGCCTGC AGCCCGCCCG GGACTTCCGG CCGCGGCCCC
  TGGAGGTGCA GGAGCGCTGC GTGGCCCGCG TCGCGGCGTC CTCAGGTGAC AACACCGCTC
  CTTCTCCAGG TTTCGGCCTC ATGGCGTCAT AGTCTTTCAA AAGTTAAGAA GGGACGAACA
  W
  TGACTCGGAA GTGTGGGCTG TTTTTCCTCT AAGCTTTGAC GAGTTAGGGT TTCAGTCCTG
  GCGGGACCGC GGATCCACTC TGTGCTTTTG CGGGACACTT GAGCGATTCA CAGTTCTCAC
  CCTTCAAAGT GCGAGCAAAA ACCCCAGTGT AGTTCAGTAT GCCCGGCGCC TACATTAGTA
  AGATGCAGCT GCAAACTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47101996	NES11235539	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31900463					SNP	A	A	A	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47101996	NES11235539	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57277605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	within coordinates
Mipol1	mirror-image polydactyly 1	within coordinates
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	within coordinates
Rr265473	regulatory region 265473	within coordinates
Rr403305	regulatory region 403305	141 bp downstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	359 bp downstream
Tssr113520	transcription start site region 113520	316 bp downstream
Tssr113521	transcription start site region 113521	255 bp downstream