rs31900625 SNP Detail

Summary

• ID
  rs31900625
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134096446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCAGAACT GCTGTGAGTC TGTGCATGGG CCTTTCTTCT
  CTTGTCCTGG CCAAACTTCT TCTTTACTTC TGGCTCTTAA CAGTCTGTCC ACTCCCTCTT
  K
  CTCTGGCTCT TAACAGTCTG TCCACTCCCT CTTTCTTCTG AGATGATCCT AGAGGGTGGC
  AGAGTTTGTG TGTGTCTGGT GTGTGTATGT GTGTGTGTGT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	WSB/EiJ
ss48101349	NES11850504	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	WSB/EiJ
rs31900625					SNP	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48101349	NES11850504	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134096446 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	within coordinates
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	1 bp proximal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	within coordinates
Rr639574	regulatory region 639574	1055 bp proximal