rs31900627 SNP Detail

Summary

• ID
  rs31900627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134096488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTCCCT TCCATGCTGG
  AATGTTGACT GCCTTGATAC TGCACTCGGG GCCTGTGTGG GCAGAACTGC TGTGAGTCTG
  TGCATGGGCC TTTCTTCTCT TGTCCTGGCC AAACTTCTTC TTTACTTCTG GCTCTTAACA
  GTCTGTCCAC TCCCTCTTTC TCTGGCTCTT AACAGTCTGT CCACTCCCTC TTTCTTCTGA
  R
  ATGATCCTAG AGGGTGGCAG AGTTTGTGTG TGTCTGGTGT GTGTATGTGT GTGTGTGTGA
  GAGGGAGAGG GAGAGGGAGA ATATCATTGG CATATGTAAC TAATTTTCAA AGTTTTCAAA
  GAGGTATTTT TCTGTAAGTC CCATTGAGAG CTGGTGTTTT AACGGAGGTC TTTTAAACAC
  ACACACACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48101351	NES11850505	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	A		G	G	A	G		A
ss321976679	CHEV_6_134069543	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31900627					SNP	A	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48101351	NES11850505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134096488 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	within coordinates
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	within coordinates
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	31 bp distal
Rr639574	regulatory region 639574	1013 bp proximal