rs31901276 SNP Detail

Summary

• ID
  rs31901276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57278135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCAGTGG TATTGGTGAA GTACTTGAAG TTGGACACTA
  CAAGATAGAA GAATAGACTA GGTTTCTAAG AGAATAGGCC TTTGGAAGGG CTCCTTGAGC
  R
  TTTTGATGTC CGTTAATTCC CGATGGTGGT AGACAGCTAA AGAAGGACAG TTTTAACCTG
  TCTCACGAGT TACCTCACTT TGCAAAGTTT CGTATTGCCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47101999	NES11235479	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31901276					SNP	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47101999	NES11235479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57278135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	399 bp distal
Mipol1	mirror-image polydactyly 1	within coordinates
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	within coordinates
Rr403305	regulatory region 403305	671 bp downstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	889 bp downstream
Tssr113520	transcription start site region 113520	846 bp downstream
Tssr113521	transcription start site region 113521	785 bp downstream