rs31901486 SNP Detail

Summary

• ID
  rs31901486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134097302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCCTG GGCTATCAGT
  GTGGTCTGGG GTACTGAGTA GCAGCTTGTA GATAAGGCTG GCCCACAGCT GTGGTTGTGG
  TTGTACACAG GAAAATCAAA TTCCAAACTC CAGCAAACTG TCGACTCATA ACCAAGGAGT
  TGTGAAATAA GACATAGACC AGACTCAGGG GCTTCGGTTC TGAATTGGGG TCCAGGAGAT
  Y
  ACAGGGTCAG GAGGTTGACC TAGAAAGGAG GACACTTGGG CTGAGTCAGA GATTGGGAGA
  GACGGCCCTT CCCGAGTAAA GCCTGGTGCC CATAGGGTCA AAACCCCATA GTCAGCTGGA
  AGATGTTTCC AAACATCTAT TGAACTCAAA AATGTTTTTT TAAACAGTGG TTCAGATCAG
  TGGGATTTCT GTTTAGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48101361	NES11850466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31901486					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48101361	NES11850466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134097302 () rs orientation: forward

Symbol	Name	Function Class
D6Mit374a	DNA segment, Chr 6, Massachusetts Institute of Technology 374a	716 bp distal
D6Mit374b	DNA segment, Chr 6, Massachusetts Institute of Technology 374b	716 bp distal
Etv6	ets variant 6	within coordinates
Rr639573	regulatory region 639573	845 bp distal
Rr639574	regulatory region 639574	199 bp proximal