rs31901537 SNP Detail

Summary

• ID
  rs31901537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66964932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGACTTGC TGAACTTGCG
  AAAAATTCAC TGCGACCTGG AGGGTCATCC CACCCCACGA CTGTCGTTTG TTGATGTGGC
  AACAGGGTCC CTTGGGCAAG GACTGGGTGC TGCCTGTGGA ATGGCTTACA CCGGCAAATA
  CTTTGACAAG GCCAGCTACC GCGTGTTCTG CCTCATGGGG GATGGTGAGT CCTCGGAAGG
  Y
  TCTGTCTGGG AGGCCTTGGC CTTTGCTTCC CACTACAACT TGGACAATCT CGTGGCAATC
  TTTGACGTGA ACCGCTTGGG ACAAAGCGGC ACAGCACCCC TAGAGCACTG TACAGCCGTT
  TATGAGAAGC GCTGCCAAGC GTTTGGGTGG AATACTTACG TGGTGGATGG TCATGATGTT
  GAAGCTCTCT GCCAGGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46225155	mCV22601555	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss47601611	NES11425479	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	T	C	C	T	C	T
ss145053569	ENSMUSSNP6422400	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31901537					SNP	T	T	C	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601611	NES11425479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66964932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	within coordinates
Gm63911	predicted gene, 63911	1258 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	537 bp downstream
Tssr77576	transcription start site region 77576	516 bp downstream