rs31901953 SNP Detail

Summary

• ID
  rs31901953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79393515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAATGATTC CTGAGGAAAT CCTACAAGCT CCACACCAGC AAAGCACAGG CAAGGGAGAT
  CAGTGACATT GCACCGCTGA TCGTTGGTTC TGTGGCGTTT GAAGATGGAG CCCCACTTAG
  TAATTTTCTT CTTTTCACCG CTTCTCCCTC CTTCCTCGCC TCATTACCTC TCCCCTGTCT
  TTCTGTTTAC CCTACCCCTT TATGATATTA TTCCAGCAAT GACTCTGATG GCTTGGGTGG
  GAATATCCTG CTGAAACACA GCCTCAGTCT CGTCACCCAA CCTTCTTAGG GGATGCCCCA
  R
  AGGTGCTTTT CTAAGGATGG GGTAACATGT GAGTTCCTAG GCTTCTCTGA AAGCTTGTGG
  GCCAGGACCC CTCAGTGACG CCTCTCTAGC CAGCTGAGCT ACGCTCACTG ATCCCTGCAG
  GGACCTGGGC CACATTAACT GTACAATAAT GCACAATACA TGGTCCTCCC TCAGCTGGCA
  GGCTTTCCTA ATGCTCTAAC TTGTTACTGC GGACAGCAAG GCTCCCTATT GTGGGCTAGT
  AAAAAAAAAA AAAAAAAAAG AAATAGTTGC AGATTGAAAC TGGAGGGCGA TTTTACTGCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46081471	mCV24178135	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31901953					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79393515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19314	CpG island 19314	538 bp distal
Gm44706	predicted gene 44706	1751 bp downstream
Pex11a	peroxisomal biogenesis factor 11 alpha	636 bp upstream
Rr649701	regulatory region 649701	594 bp distal
Rr649702	regulatory region 649702	344 bp distal
Tssr67364	transcription start site region 67364	598 bp downstream
Tssr67365	transcription start site region 67365	580 bp downstream
Tssr73125	transcription start site region 73125	791 bp upstream
Tssr73126	transcription start site region 73126	771 bp upstream
Tssr73127	transcription start site region 73127	734 bp upstream
Tssr73128	transcription start site region 73128	679 bp upstream
Tssr73129	transcription start site region 73129	654 bp upstream
Wdr93	WD repeat domain 93	Intron