rs31902021 SNP Detail

Summary

• ID
  rs31902021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148372500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGAGGC CAGCGGCCCC
  CAAGCTCCGC TCGCTGGCGA GCAGACCGCC GCCAGGTCCG TGACAACTAC GTCCCCAGCG
  CGCACGCGAA GCACTCGCCG CCGCCGCCGC CGCCGCCGCC GCCGCCGCCT TTTATCTGCT
  GCCCGCCTTT GTTTGGGTCC CGGTTCCTAC CACGGGGTGC GGGGGTGTCC CGGGCAGCCT
  Y
  TAGAGTCGCG CCTCCCCCCG TCCACTGGCG CCTCCAGCAT CAGCGCCTGC GGGCTCTGCG
  TCACCGTCCG GCTTAGGCTT GCTCTCCGCC GCGCGCTGCT GTCTCCCGAT TCCGCCGCCA
  GGCGCCGCCC TGGCTGCCGC TCCCCCTGCG GGAGCCGCGT GGTGGTACAG CCAGCTTCCC
  GTGTTGGCGA GCAGGGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45583479	mCV24938543	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31902021					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148372500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15301	CpG island 15301			within coordinates
Disp3	dispatched RND transporter family member 3			mRNA-UTR
				Noncoding-Transcript-Variant
Gm68159	predicted gene, 68159			224 bp upstream
Rr604639	regulatory region 604639			89 bp distal
Rr604640	regulatory region 604640			within coordinates
Rr604641	regulatory region 604641			111 bp proximal
Rr604642	regulatory region 604642			235 bp proximal
Rr604643	regulatory region 604643			254 bp proximal
Rr604644	regulatory region 604644			368 bp proximal
Rr604645	regulatory region 604645			534 bp proximal
Tssr44603	transcription start site region 44603			89 bp upstream