rs31902386 SNP Detail

Summary

• ID
  rs31902386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTGTTCT GCCTCATGGG
  GGATGGTGAG TCCTCGGAAG GTTCTGTCTG GGAGGCCTTG GCCTTTGCTT CCCACTACAA
  CTTGGACAAT CTCGTGGCAA TCTTTGACGT GAACCGCTTG GGACAAAGCG GCACAGCACC
  CCTAGAGCAC TGTACAGCCG TTTATGAGAA GCGCTGCCAA GCGTTTGGGT GGAATACTTA
  Y
  GTGGTGGATG GTCATGATGT TGAAGCTCTC TGCCAGGCCT TTTGGAAAGC AGCTCAAGTC
  AAGAATAAGC CTACTGCCCT GATTGCCAAG ACCTTCAAGG GTAGAGGTAT TCCAAATGTC
  GAGGATGCGG AAAATTGGCA TGGAAAGCCT ATGCCAAAAG ACAGAGCTGA TGGGATTGTC
  AAATTAATTG AGAATCGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46194419	mCV22601556	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss47601620	NES11425482	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C	C	T	C	C	C
ss145053572	ENSMUSSNP3312955	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31902386					SNP	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601620	NES11425482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	56 bp distal
Gm63911	predicted gene, 63911	1417 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	696 bp downstream
Tssr77576	transcription start site region 77576	675 bp downstream