rs31902389 SNP Detail

Summary

• ID
  rs31902389
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66965118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCTCGG AAGGTTCTGT
  CTGGGAGGCC TTGGCCTTTG CTTCCCACTA CAACTTGGAC AATCTCGTGG CAATCTTTGA
  CGTGAACCGC TTGGGACAAA GCGGCACAGC ACCCCTAGAG CACTGTACAG CCGTTTATGA
  GAAGCGCTGC CAAGCGTTTG GGTGGAATAC TTACGTGGTG GATGGTCATG ATGTTGAAGC
  W
  CTCTGCCAGG CCTTTTGGAA AGCAGCTCAA GTCAAGAATA AGCCTACTGC CCTGATTGCC
  AAGACCTTCA AGGGTAGAGG TATTCCAAAT GTCGAGGATG CGGAAAATTG GCATGGAAAG
  CCTATGCCAA AAGACAGAGC TGATGGGATT GTCAAATTAA TTGAGAATCG GATACAGACA
  AACCGAAATC TCACACCGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46167532	mCV22601566	ABI	CRAMUS_MOUSE	f	SNP		T	A
ss47601623	NES11425485	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	T	A	T	T	T	T	A	T	T	T
ss145053576	ENSMUSSNP6491986	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31902389					SNP	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47601623	NES11425485	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66965118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	83 bp distal
Gm63911	predicted gene, 63911	1444 bp upstream
Tktl2	transketolase-like 2	within coordinates
Tssr77575	transcription start site region 77575	723 bp downstream
Tssr77576	transcription start site region 77576	702 bp downstream