rs31902479 SNP Detail

Summary

• ID
  rs31902479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65019495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC ATCACTTATA TTTTAAAAGT
  W
  ACAAATGTTG CACTGATTCT AGTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46082010	mCV23294043	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss144901074	ENSMUSSNP4867211	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
ss322236098	CHEV_7_72514633	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31902479					SNP	T	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65019495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	616 bp proximal
Gm57226	predicted gene, 57226	1556 bp upstream
Rr647944	regulatory region 647944	273 bp distal
Rr647945	regulatory region 647945	576 bp proximal
Rr647946	regulatory region 647946	1258 bp proximal
Rr647947	regulatory region 647947	1567 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	1675 bp upstream
Tssr72804	transcription start site region 72804	1127 bp downstream
Tssr72805	transcription start site region 72805	1142 bp downstream
Tssr72806	transcription start site region 72806	1161 bp downstream
Tssr72807	transcription start site region 72807	1463 bp downstream