rs31903642 SNP Detail

Summary

• ID
  rs31903642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75237595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA AGGTGAGGGG AAGTCCAGCC
  R
  AGAGATGAAG TAGAGGATGG TGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46081834	mCV23922486	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss322267521	CHEV_7_82732733	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31903642					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75237595 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	130 bp upstream
Rr649260	regulatory region 649260	within coordinates
Rr649261	regulatory region 649261	1399 bp proximal
Tssr67242	transcription start site region 67242	1659 bp downstream
Tssr67243	transcription start site region 67243	1627 bp downstream
Tssr67244	transcription start site region 67244	1612 bp downstream
Tssr67245	transcription start site region 67245	1575 bp downstream
Tssr67246	transcription start site region 67246	1543 bp downstream
Tssr67247	transcription start site region 67247	1514 bp downstream
Tssr67248	transcription start site region 67248	1471 bp downstream
Tssr67249	transcription start site region 67249	1435 bp downstream
Tssr67250	transcription start site region 67250	1399 bp downstream
Tssr73048	transcription start site region 73048	41 bp downstream