rs31905323 SNP Detail

Summary

• ID
  rs31905323
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACAAAGAC AAACTCCCAG TTGTCTCTGC
  ATCTCTCTAA TTTAAATCTC CACAAAGATA GGCTTTGAAT ATTTCAAGCA GTTACACTGC
  TTTTTGCCAG AGAAATCTGG CATTGTGATA TGGTAATACC CTGCCCATAA ATTAGCTGCT
  S
  TCAGCCAAAC ACCCTCTTCT TGGGCTTGTA TGTTGAGAAG CTATGGCCTA GCCTCTCTAG
  GTTCTATGAG CATGGGTGCG TTTGAGTAAC AGCACTGGGA TCCCTTTCCT GGTTGAACAG
  AGCTCAGCTG AATCCAAAGA GATTCTTTCA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47102933	NES11148515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C		C	C	C		C
ss319635024	CHEV_1_10867945	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31905323					SNP	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102933	NES11148515	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948088 () rs orientation: forward

Symbol	Name	Function Class
Rr29991	regulatory region 29991	within coordinates
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	748 bp upstream