rs31905546 SNP Detail

Summary

• ID
  rs31905546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18909166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA AAAGAAAGAA AGGAAGGAAG
  R
  AAGAAAAGAA GAGAGAAAGA GAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46081851	mCV25048364	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss322116603	CHEV_7_19760590	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31905546					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18909166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	1053 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1180 bp upstream
Gm71808	predicted gene, 71808	858 bp downstream
Rr155270	regulatory region 155270	1766 bp distal
Rr155271	regulatory region 155271	566 bp distal
Rr167137	regulatory region 167137	1965 bp distal
Rr167138	regulatory region 167138	234 bp proximal
Tssr64790	transcription start site region 64790	1175 bp upstream
Tssr64791	transcription start site region 64791	1205 bp upstream
Tssr64792	transcription start site region 64792	1242 bp upstream
Tssr64793	transcription start site region 64793	1272 bp upstream
Tssr64794	transcription start site region 64794	1407 bp upstream