rs31905554 SNP Detail

Summary

• ID
  rs31905554
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48492615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCCATAG ACAAACCATG
  GGTCAGAGTT GAAAAGGGGA GACAAGAATT TATAAGGATG GGGTAGAAGG TGAGGTCTAC
  CATACCATCT GGGGACAGGT TGGACAGTCT CGGCTACTCA GATCCCACTG AGAGATGGCC
  TTGAAAGGGC TTCTTAAAGA ATAGTACTGT GAAAGAGAAT TGCTCCTAAG TGGGAACTCT
  M
  TATATATAGT GAGTCAGTGG AATCAGATCT GGGTCCACTT TCTAGCTTTT TCAACGCTTT
  GTGGTCCAGG AAAGCCGTTA ACCTCTCCTA CCGTTAGTAT CCTTTCCTAA ATGGGGGCTC
  TTTGGGAAGT GCTCAGAGAA TTGCTTCTGT ATGGTACCCA GTAACAGAAT GAAAGTTCTA
  ATTGGTTCTG CTACCACTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46082437	mCV25161966	ABI	CRAMUS_MOUSE	f	SNP		C	A			A		A
ss48221978	NES11798748	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		C	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31905554					SNP	A	C	A	A	A	A	C	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48221978	NES11798748	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48492615 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	Intron
Rr646923	regulatory region 646923	1979 bp distal
Rr646924	regulatory region 646924	130 bp distal
Tssr72622	transcription start site region 72622	774 bp downstream
Tssr72623	transcription start site region 72623	796 bp downstream