rs31906093 SNP Detail

Summary

• ID
  rs31906093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:34097862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAAGTG GTTTGCATGC
  ATGCCTGGTG CCAAGGGAGG ACATAAGAAG GCATCAGATC TCCTGGACTA GTCATTATGC
  TTGTGAGCCA CCATGTGGGT GATAGGTTCT CTACAGGAAC ATCAAGTGCT CTTAACTACT
  GAGCCGTCTC CAGCTCCTGC TTGACTGTTT GTAACTATGC ATGTAAAGTC ACATTATAGA
  Y
  ACTTTTTAAA AATTTAAAAT ACATTTTTTC ATACAAAATA TTATGATTTC CCTTTCCCCA
  ACTCATTCCA GCCTTCTCAT AGTTCCTAGC CACCCAAATC CTCACCTGTT TCCTTCTTAT
  TAGTATACTT ACGTGCATTA GAGAGAGAAG TACAAGACAA AAGGGGGTTG GGAGGAGAGC
  CAAAGAAAAA GCACATAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39338891	mCV23549127	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss147537702	ENSMUSSNP46794	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31906093					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34097862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mtdh	metadherin			Intron
				Noncoding-Transcript-Variant
Rr500666	regulatory region 500666			1753 bp distal
Rr500667	regulatory region 500667			497 bp distal
Tssr131017	transcription start site region 131017			1792 bp upstream
Tssr133963	transcription start site region 133963			1800 bp downstream