rs31906286 SNP Detail

Summary

• ID
  rs31906286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAAGATA GGCTTTGAAT ATTTCAAGCA
  GTTACACTGC TTTTTGCCAG AGAAATCTGG CATTGTGATA TGGTAATACC CTGCCCATAA
  ATTAGCTGCT CTCAGCCAAA CACCCTCTTC TTGGGCTTGT ATGTTGAGAA GCTATGGCCT
  R
  GCCTCTCTAG GTTCTATGAG CATGGGTGCG TTTGAGTAAC AGCACTGGGA TCCCTTTCCT
  GGTTGAACAG AGCTCAGCTG AATCCAAAGA GATTCTTTCA AACCTACTGA GTCTTAGAAA
  CACATCTCTG CATTGGTAAG GAACCTTGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47102936	NES11148516	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A		A	A	A		A
ss319635025	CHEV_1_10867995	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31906286					SNP	A	A	A	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102936	NES11148516	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948138 () rs orientation: forward

Symbol	Name	Function Class
Rr29991	regulatory region 29991	within coordinates
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	698 bp upstream