rs31906292 SNP Detail

Summary

• ID
  rs31906292
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGCGTTTG AGTAACAGCA CTGGGATCCC
  TTTCCTGGTT GAACAGAGCT CAGCTGAATC CAAAGAGATT CTTTCAAACC TACTGAGTCT
  TAGAAACACA TCTCTGCATT GGTAAGGAAC CTTGCCTCTG CCTTATTTCT TCTGCCAAAA
  S
  GTGGGTTAAA CATCTTCTGC AAAAGGTAGA TTGATTGCCA TACTTtgacc aaaccatctc
  agtcagtcaa caggttctcc agagcaggag caaggattaa aaagaaaaaa agacaattag
  acaacattgt agcctgaccc cagccagttc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47102942	NES11148518	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	C	G	G	G		G	G	G	G		G
ss319635029	CHEV_1_10868170	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31906292					SNP	G	G	G	G	G	C	C	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102942	NES11148518	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948313 () rs orientation: forward

Symbol	Name	Function Class
Rr11561	regulatory region 11561	1888 bp proximal
Rr29991	regulatory region 29991	within coordinates
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	523 bp upstream