rs31906918 SNP Detail

Summary

• ID
  rs31906918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCATACCA CCAATGTGAC TCGAGAGCAT
  GGCATGTCTC ATTGGACTGG AACACTGAGT AAGTCCAGCT ATGGCATATT CCTTATTTTT
  ATTTGTTTTT CTTAATCTAA ACAAAGAATG GGCTGCTTAT AAATAAACAC ATAACATGCA
  R
  AAGGTCATGT TATTTAGGAG GTTTTATTAT TGATTTGTTT AGAAGCTGGA AGCAATGCAA
  TATGGCCAAC AGAAatttat ttaactggta cttattgaaa actaggtatg tactaaacat
  tgtaccaatc cttggaaatt cagtactgaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47102948	NES11148480	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G		G	G	G		G
ss319635037	CHEV_1_10868842	CHEVERUD	SCREENING_POP	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31906918					SNP	G	G	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102948	NES11148480	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948985 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	1526 bp upstream
Rr11561	regulatory region 11561	1216 bp proximal
Rr29991	regulatory region 29991	185 bp distal
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	146 bp downstream
Tssr5932	transcription start site region 5932	1524 bp upstream