rs31906921 SNP Detail

Summary

• ID
  rs31906921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10949225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGCTGG AAGCAATGCA
  ATATGGCCAA CAGAAATTTA TTTAACTGGT ACTTATTGAA AACTAGGTAT GTACTAAACA
  TTGTACCAAT CCTTGGAAAT TCAGTACTGA AAAGCCAGGT GTGAACTCTG CTCTCATGGA
  GCTCAAATGA TACCATCAAC TCAGTTTTCC AGGCTTTTAG AGCAGTGCAG ATTAGGTTAG
  R
  GACTAAAACA AAATCCTTGA GTCTTTCTTC AAGTTTTCTA ACTGAAGTGT AGAAGAAGGC
  CTGGAAGCTC AGTGGTTTAC AAGCACTGGC TGCTGGAAGA GGACCTAAGT TTGATTCCCA
  CCACCCAGAC AGCAGTTTAC CACTGTCTAT AATTCCAAGC TTGAGGGATC TTTTCTCTTA
  ATAAGCGTTA CACACAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47102951	NES11148437	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31906921					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102951	NES11148437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10949225 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	1286 bp upstream
Rr11561	regulatory region 11561	976 bp proximal
Rr29991	regulatory region 29991	425 bp distal
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	386 bp downstream
Tssr5932	transcription start site region 5932	1284 bp upstream