rs31907707 SNP Detail

Summary

• ID
  rs31907707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10949598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaatactat acacataaaa taaaTTTAAA
  ATAAAGTATA AATGAAAGAC TATGTATAAA TTAGCCACTA AAACATTAAA GTGGCAATTT
  AACTTCTATT ATAAGCAAAC TGTGAGCCAG ACTGATGTCA TAATGATAGT TTTAATAATT
  Y
  ATAATTCATA GCCTGATTCC CTTTATGGTT TCTCCCATGC TTTCTCTCCC CAATTTCTTC
  ATTTTCTTTA CCAAACCACT ACAAAaaaac aaaacaaaac aaaaaaccaa aaaacaacaa
  caacaaaaAA CATGCAgcca aagaaatgac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss47102957	NES11148427	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	T		T	T		T
ss319635044	CHEV_1_10869455	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31907707					SNP	T	T	C	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102957	NES11148427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10949598 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	913 bp upstream
Rr11561	regulatory region 11561	603 bp proximal
Rr29991	regulatory region 29991	798 bp distal
Rr370844	regulatory region 370844	109 bp downstream
Tssr5931	transcription start site region 5931	759 bp downstream
Tssr5932	transcription start site region 5932	911 bp upstream