rs31907710 SNP Detail

Summary

• ID
  rs31907710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10949618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaaTTTAAA ATAAAGTATA AATGAAAGAC
  TATGTATAAA TTAGCCACTA AAACATTAAA GTGGCAATTT AACTTCTATT ATAAGCAAAC
  TGTGAGCCAG ACTGATGTCA TAATGATAGT TTTAATAATT TATAATTCAT AGCCTGATTC
  Y
  CTTTATGGTT TCTCCCATGC TTTCTCTCCC CAATTTCTTC ATTTTCTTTA CCAAACCACT
  ACAAAaaaac aaaacaaaac aaaaaaccaa aaaacaacaa caacaaaaAA CATGCAgcca
  aagaaatgac tcagtggcta agagtactgg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47102960	NES11148428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C	C	C		C	C	C		C
ss319635045	CHEV_1_10869475	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31907710					SNP	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102960	NES11148428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10949618 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	893 bp upstream
Rr11561	regulatory region 11561	583 bp proximal
Rr29991	regulatory region 29991	818 bp distal
Rr370844	regulatory region 370844	129 bp downstream
Tssr5931	transcription start site region 5931	779 bp downstream
Tssr5932	transcription start site region 5932	891 bp upstream