rs31908584 SNP Detail

Summary

• ID
  rs31908584
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10950175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAAAAG TAAAAAGTAC
  CAGCACTTGG GAGGCAGAGG CAGGCCTGGT TTACAAAGTG AGTTCCAGGA CAGCCAGGGC
  TATACAGAGA AACCCGGTCT CAAAAAACCA AAAAAAAAAA AAAAAAAAAA AAAAAAAACA
  ACCAAACAAA AACAAAAAAC AACTCTCAGC AAAGTTCTAG TAACCAATTT CAACCACTGG
  S
  TTAATATTAA TTTTTGATAA GCCCAATGAT ACATAATGAA ACTGAAAAGG TCAGTTTAGG
  AAGTTTGGAA GGACACGAAA ACACTTGCCT CTCTAGAAGG GAGAGGGTAA TTAACATTCC
  TCAGACCACA GGGAAGAAAG CGACCTGCGG GTGGGGACAT ATCCCGCAGG ACTGATTGTT
  GCCTACTGTC AGACAAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47102966	NES11148380	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31908584					SNP	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102966	NES11148380	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10950175 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	336 bp upstream
Rr11561	regulatory region 11561	26 bp proximal
Rr29991	regulatory region 29991	1375 bp distal
Rr370844	regulatory region 370844	686 bp downstream
Tssr5931	transcription start site region 5931	1336 bp downstream
Tssr5932	transcription start site region 5932	334 bp upstream