rs31910088 SNP Detail

Summary

• ID
  rs31910088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10946979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGTGAAAT AAGCTACAGA TGGTGTTCAG
  GATAGTCCTG TCAGAAATTT GCTTTTCTTT TGATGTTGGC CTTATAGGCA AAGAAGTTGT
  AGAGAAAAGT GACTATTTGG TTTTACATAG AGGTCTTTAG CCAGCCACCT CGTCTGATCC
  Y
  TTTAATGCCA GTTCAGGTCA ACTGTAAGGA ACTCTGGATA CACAGCACTT GAAGGATGAA
  GATATTCCTG CTTTGTGCTT AGTCTCATAA CATCCATACA ATGCATTTCA GTATTTATCA
  GACCAATGCA ATTAGTAGCT TCCAGCTAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47102903	NES11148503	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		C	C	C	C		C
ss319635016	CHEV_1_10866836	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31910088					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102903	NES11148503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10946979 () rs orientation: forward

Symbol	Name	Function Class
Rr29990	regulatory region 29990	1379 bp distal
Rr29991	regulatory region 29991	1023 bp proximal
Rr370844	regulatory region 370844	646 bp upstream
Tssr5931	transcription start site region 5931	1857 bp upstream