rs31910977 SNP Detail

Summary

• ID
  rs31910977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10947135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTTTAC ATAGAGGTCT
  TTAGCCAGCC ACCTCGTCTG ATCCCTTTAA TGCCAGTTCA GGTCAACTGT AAGGAACTCT
  GGATACACAG CACTTGAAGG ATGAAGATAT TCCTGCTTTG TGCTTAGTCT CATAACATCC
  ATACAATGCA TTTCAGTATT TATCAGACCA ATGCAATTAG TAGCTTCCAG CTAGTCTCAG
  R
  GCTGCCTGGA ACCTGCTAAG GACACACTTA TGCAAAGACA TATACCTGAA GTGGATACCA
  AAAACAAACG TGCTGAGATC TTTCTTTTAT TGTATCTTTA TTTCATTTAT TATATGGTAC
  CATGTGCTAT TTAGCAAATT CTATGTTTCT ATGATCTAAT AATTTTACCC TGTTAGGACA
  ATAGGGAAAT TTAGTAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47102912	NES11148507	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31910977					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102912	NES11148507	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10947135 () rs orientation: forward

Symbol	Name	Function Class
Rr29990	regulatory region 29990	1535 bp distal
Rr29991	regulatory region 29991	867 bp proximal
Rr370844	regulatory region 370844	490 bp upstream
Tssr5931	transcription start site region 5931	1701 bp upstream