rs31910983 SNP Detail

Summary

• ID
  rs31910983
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10947352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGTGCTGA GATCTTTCTT TTATTGTATC
  TTTATTTCAT TTATTATATG GTACCATGTG CTATTTAGCA AATTCTATGT TTCTATGATC
  TAATAATTTT ACCCTGTTAG GACAATAGGG AAATTTAGTA AAAATCTGTA CAAAAACGTA
  W
  AAAGAGGAGA AGATACATTC ATTCTATCCA CTGAAGTTAC TTGGGTCATA CATTTTTGGT
  AAACTGATAA ATTACCCTCA TGACAGGTCT CTCTACTTTT TAACAATGTC TCTACCACTT
  TTTCTATAAT TTGATGCATC TATAATGAAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47102918	NES11148510	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	T	A	A	A		A	A	A	A		A
ss319635019	CHEV_1_10867209	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31910983					SNP	A	A	A	A	A	T	T	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102918	NES11148510	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10947352 () rs orientation: forward

Symbol	Name	Function Class
Rr29990	regulatory region 29990	1752 bp distal
Rr29991	regulatory region 29991	650 bp proximal
Rr370844	regulatory region 370844	273 bp upstream
Tssr5931	transcription start site region 5931	1484 bp upstream