rs31911805 SNP Detail

Summary

• ID
  rs31911805
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10947517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTCATTC TATCCACTGA AGTTACTTGG
  GTCATACATT TTTGGTAAAC TGATAAATTA CCCTCATGAC AGGTCTCTCT ACTTTTTAAC
  AATGTCTCTA CCACTTTTTC TATAATTTGA TGCATCTATA ATGAAATCTT GTTGAGCAGA
  M
  ATAAGCTTTC TATTATGCTT CATAAATGAG TCGGGAATTA GGACTATGAG ATTTGAATTA
  ATGAGCTTCA CATTTTAATA TGCTTCATAT AATTCTAGTT TCTTAAAGCT GGAGAAGCCC
  TGAACCCACA CATGTTAATT AGACAGTTGT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47102921	NES11148511	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	A	C	C	C		C	C	C		C
ss319635020	CHEV_1_10867374	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31911805					SNP	C	C	C	C	C	A	A	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47102921	NES11148511	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10947517 () rs orientation: forward

Symbol	Name	Function Class
Rr29990	regulatory region 29990	1917 bp distal
Rr29991	regulatory region 29991	485 bp proximal
Rr370844	regulatory region 370844	108 bp upstream
Tssr5931	transcription start site region 5931	1319 bp upstream