rs31913139 SNP Detail

Summary

• ID
  rs31913139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189857825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG AAGTCAGGGC CAGGGAGGAG
  R
  GCCTTGTGGA AGCTGTCAGA AGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45084513	mCV23934080	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss146496115	ENSMUSSNP5039622	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31913139					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189857825 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	within coordinates
Prox1	prospero homeobox 1	Intron
Rr425913	regulatory region 425913	1938 bp distal
Rr425914	regulatory region 425914	262 bp distal
Rr425915	regulatory region 425915	within coordinates
Rr425916	regulatory region 425916	1649 bp proximal