rs31913538 SNP Detail

Summary

• ID
  rs31913538
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:67156329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGAATC CCTGGATTCA
  GTCCTCAGCA TTGCCATAAA ATCAGATGTG CCTGTAATCC CATCACTCGT GAGGCAGAGA
  CAGAACGAGC AAATGTCTAA GATCATCTTT GGCTACAAAG TGAGTTCAAG GCCAGAGAGA
  TCATGTCTCA AAAACATTAT AGCTGAACTT TAAATGTTTG AAATGGTTTG TACTGATTGT
  S
  GGAATTTTTA AAGGTTATAA TTTTATAAAA GAATAAAATC TTACTATTAT CTTCTCTGCC
  CCCCTCAATA TACTTAGTAA TGCAACTGGC CTCTTTTGTT GACAGAGTAT TCAGTTCAAG
  GGAATGAAGA ACTGAGAATT ATCTTGGTGA ATGGATTCAA ATATATGGAA TAAGAGTATG
  CTGAAGATTT GATCCGTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47603828	NES11443549	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31913538					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47603828	NES11443549	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:67156329 () rs orientation: forward

Symbol	Name	Function Class
Npy1r	neuropeptide Y receptor Y1	within coordinates
Tssr77583	transcription start site region 77583	871 bp upstream