rs31913888 SNP Detail

Summary

• ID
  rs31913888
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189077258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA CTGCAGGCCT GTCTGGGCCC
  M
  ACAGCCAGAT TCTCCCAACA CACAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45084522	mCV24983964	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss146485637	ENSMUSSNP297956	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A		C
ss320190730	CHEV_1_191168940	CHEVERUD	SCREENING_POP	f	SNP					C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31913888					SNP	C	C	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189077258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			169 bp downstream
Cpgi1195	CpG island 1195			636 bp distal
Kcnk2	potassium channel, subfamily K, member 2			Intron
				Noncoding-Transcript-Variant
Rr425780	regulatory region 425780			1917 bp distal
Rr425781	regulatory region 425781			1761 bp distal
Rr425782	regulatory region 425782			1620 bp distal
Rr425783	regulatory region 425783			1365 bp distal
Rr425784	regulatory region 425784			1067 bp distal
Rr425785	regulatory region 425785			1085 bp distal
Rr425786	regulatory region 425786			880 bp distal
Rr425787	regulatory region 425787			532 bp distal
Tssr15712	transcription start site region 15712			1703 bp upstream
Tssr15713	transcription start site region 15713			1312 bp upstream