rs31914112 SNP Detail

Summary

• ID
  rs31914112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79211233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CCCAGGCTAA GCAGGAACAG
  Y
  GGGCGGGCGC TAGCTACATC AATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39340148	mCV22922463	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148197499	ENSMUSSNP1288202	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T		T
ss325027129	CHEV_15_79157463	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31914112					SNP	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79211233 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	594 bp upstream
Cpgi7329	CpG island 7329	766 bp proximal
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	1188 bp upstream
Rr505593	regulatory region 505593	within coordinates
Rr505594	regulatory region 505594	687 bp proximal
Rr505595	regulatory region 505595	921 bp proximal
Tssr132082	transcription start site region 132082	550 bp upstream
Tssr135328	transcription start site region 135328	1093 bp downstream
Tssr135329	transcription start site region 135329	1121 bp downstream
Tssr135330	transcription start site region 135330	1168 bp downstream