rs31914216 SNP Detail

Summary

• ID
  rs31914216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44143812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC AAGAAATGTT AAGAATGCCC
  Y
  ATTAGAAGAA GAAGAAAAAA AAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45083977	mCV23636054	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149020961	ENSMUSSNP4172348	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss319706027	CHEV_1_44161497	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31914216					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44143812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi223	CpG island 223	1886 bp distal
Gm29247	predicted gene 29247	within coordinates
Poglut2	protein O-glucosyltransferase 2	Noncoding-Transcript-Variant
Rr410461	regulatory region 410461	1721 bp distal