rs31915529 SNP Detail

Summary

• ID
  rs31915529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103251718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGT CACTAAGCCC AATAACCTGA
  R
  TTTGATTATT TTTCTCTTTT CTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39340435	mCV23154256	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			A		G
ss52584134	NES15645654	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		G			G	A	G		G
ss325087095	CHEV_15_103173722	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31915529					SNP	A	A	G	A	A	A	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584134	NES15645654	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103251718 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	995 bp downstream
Rr404654	regulatory region 404654	522 bp downstream
Rr510619	regulatory region 510619	1207 bp distal
Rr510620	regulatory region 510620	257 bp distal
Rr510621	regulatory region 510621	669 bp distal
Rr510622	regulatory region 510622	297 bp proximal
Tssr136772	transcription start site region 136772	1267 bp downstream
Tssr136773	transcription start site region 136773	1347 bp downstream
Tssr136774	transcription start site region 136774	1421 bp downstream
Tssr136775	transcription start site region 136775	1439 bp downstream
Tssr136776	transcription start site region 136776	1483 bp downstream
Tssr136777	transcription start site region 136777	1515 bp downstream