rs31915899 SNP Detail

Summary

• ID
  rs31915899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140426334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT GAGAGTGTGC ATCTGTGGTG
  R
  ATAGAGTGCT TGCCTAGCAT GTAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45585522	mCV23725040	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147709691	ENSMUSSNP1066124	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs31915899					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140426334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	490 bp proximal
Gm69527	predicted gene, 69527	108 bp downstream
Gm69529	predicted gene, 69529	850 bp upstream
Rcc2	regulator of chromosome condensation 2	1518 bp upstream
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	360 bp proximal
Rr603518	regulatory region 603518	1028 bp proximal
Rr603519	regulatory region 603519	1529 bp proximal
Tssr39970	transcription start site region 39970	843 bp upstream
Tssr39971	transcription start site region 39971	912 bp upstream
Tssr39972	transcription start site region 39972	941 bp upstream
Tssr39973	transcription start site region 39973	963 bp upstream
Tssr39974	transcription start site region 39974	1312 bp upstream
Tssr39975	transcription start site region 39975	1448 bp upstream
Tssr39976	transcription start site region 39976	1464 bp upstream
Tssr39977	transcription start site region 39977	1579 bp upstream
Tssr44270	transcription start site region 44270	620 bp downstream
Tssr44271	transcription start site region 44271	642 bp downstream
Tssr44272	transcription start site region 44272	776 bp downstream