rs31915969 SNP Detail

Summary

• ID
  rs31915969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCTCCTT GTGCTGGCAT AAAACAACTT TTATGTTATC
  TGGGATTGAA CTCAGAATCT TGTACATGAT AAGCCCAGTA CCACTGAGCC ACACCCCAGC
  Y
  CCTCACTGGG GGATTCTAGG CAGGGGCTCT ACCACTGAGC CACACCCCAG CCCCTCACTG
  GAGGATTCTA GGCAGGGGCG CTACCACTGA GCCACGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss46083164	mCV22838013	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss322138607	CHEV_7_31823329	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31915969					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737735 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	Intron
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	997 bp downstream
Mir7050	microRNA 7050	1948 bp downstream
Rr644981	regulatory region 644981	1311 bp distal
Rr644982	regulatory region 644982	1015 bp distal
Tssr65831	transcription start site region 65831	1302 bp downstream
Tssr65832	transcription start site region 65832	893 bp downstream
Tssr65833	transcription start site region 65833	454 bp downstream
Tssr65834	transcription start site region 65834	423 bp downstream
Tssr71891	transcription start site region 71891	1811 bp upstream
Tssr71892	transcription start site region 71892	1216 bp upstream
Tssr71893	transcription start site region 71893	443 bp upstream
Tssr71894	transcription start site region 71894	420 bp upstream
Tssr71895	transcription start site region 71895	391 bp upstream
Tssr71896	transcription start site region 71896	361 bp upstream
Tssr71897	transcription start site region 71897	749 bp downstream
Tssr71898	transcription start site region 71898	1898 bp downstream