rs31916081 SNP Detail

Summary

• ID
  rs31916081
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137852997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA CCCACATACA GCACTCACTT
  K
  ATTACATATC TATAACTACA GCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45085194	mCV23222490	ABI	CRAMUS_MOUSE	f	SNP	T	T					G		G
ss49506897	NES12869703	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G		T	G	T	T	T	T	G	T	G
ss145574389	ENSMUSSNP3875453	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31916081					SNP	T	T	G	G	T	G	G	T	G	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49506897	NES12869703	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137852997 () rs orientation: forward

Symbol	Name	Function Class
A130050O07Rik	RIKEN cDNA A130050O07 gene	1992 bp upstream
Gm4258	predicted gene 4258	within coordinates
Gm26936	predicted gene, 26936	within coordinates
Gm37124	predicted gene, 37124	within coordinates
Gm41959	predicted gene, 41959	within coordinates
Mir181a-1hg	Mir181a-1 and Mir181b-1 host gene	within coordinates
Rr419642	regulatory region 419642	1169 bp distal
Tssr9119	transcription start site region 9119	355 bp downstream
Tssr9120	transcription start site region 9120	249 bp downstream