rs31916676 SNP Detail

Summary

• ID
  rs31916676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156737117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GCAAAGGTCA GAGATCACAA
  R
  CCCAAGAGCA GCCTAAGCTA CACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45085022	mCV23083192	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss145809022	ENSMUSSNP219364	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31916676					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156737117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr396428	regulatory region 396428			1490 bp upstream
Rr421275	regulatory region 421275			519 bp proximal
Rr421276	regulatory region 421276			1460 bp proximal