rs31916959 SNP Detail

Summary

• ID
  rs31916959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16680368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTTCTACCTT GGCTGAGGCA GAGAACTGCC CTAAGGGAAA GAAGTCTGGG
  Y
  TAGGTCTCCT CAGAGGCTGG ACCGCTGAGG GCCACCAGGG TGGCCTATTG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46083334	mCV23532809	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51882284	NES14893966	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T		T	C	C	C	C	C	C	C
ss148400047	ENSMUSSNP532155	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31916959					SNP	T	T	C	C	C	T	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882284	NES14893966	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16680368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	678 bp distal
Cpgi18407	CpG island 18407	within coordinates
Gm71929	predicted gene, 71929	790 bp upstream
Pnma8b	PNMA family member 8B	within coordinates
Rr368243	regulatory region 368243	1786 bp downstream
Rr642822	regulatory region 642822	1751 bp distal
Rr642823	regulatory region 642823	1817 bp distal
Rr642824	regulatory region 642824	300 bp distal
Tssr64660	transcription start site region 64660	1723 bp downstream
Tssr64661	transcription start site region 64661	675 bp downstream
Tssr70792	transcription start site region 70792	786 bp upstream