rs31917394 SNP Detail

Summary

• ID
  rs31917394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185868049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTAGAA AAGCCTTAGG
  CTGTGGAGCA AGGATCAGTA GCTGACTTTT ATAAGGGCAT GGAGAAGACA GGGGTTGGTC
  CTTTGGAGTA GTGGCCTCTG GTGAGCGGAT TCTGTAAGCA ATGGCTGTGC TCCAGTTGAA
  CACTTTCAAG AGATGATAAT TGGTAAAGAC CATTTAATCA CACCTTGCCT TTCTATCAGC
  Y
  ACAGCTGTGG ATGAGTAGGA GACACCCTGC TGAGGACACC ACCTTTGATT GCTTAAAAAA
  AAAAAAAAAA AGCTTAAAGC TTTTGAAGGC ATTTTTTCTT CTTCTTAGTA AGTGAAAAAT
  CAGGGTCTTT TTCTGTTTTT ATCCAGAACA TACACGAAAG GGTACAAATG GACCTGATGA
  AATTTTTTAA TTAGTTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45084933	mCV24949005	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146452384	ENSMUSSNP268285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31917394					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185868049 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	901 bp proximal
Rr425454	regulatory region 425454	1992 bp proximal