rs31918159 SNP Detail

Summary

• ID
  rs31918159
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51623204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACAGCT AGGTGTATTT
  CTGAAAGTTG GTGGTACTGA CATTTCAATG ATTGTCAGCC TCGGAGATAT GCAACCAAAG
  GCTTTGGTCA CACTCTAAAA GATACGCATT CCTCTAAAGA TGTTTCCTTT GTCTAGAGTT
  GTTTATATAC ACAGGGCAAG ATGAATGAAA GCAAACAAGA TATGAAGCAT ATCTAGAGCC
  M
  ACACACCCAT AATCAAATTA GAACATGCGG CTTATCTGTC TGACAGTGAG GAGCATACTG
  ACCCTACACA TCCCTAGGCT ACCCCTTAGT GCACTGATGC ATTGCACTAT TTTCATCTGT
  GTTGAACGGG CAAATATATT GGATTGACCC TCTTGCTGAG TACATGGATA GCTCAATTCA
  GTTCAATTGA GCAAGTCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45084764	mCV23215998	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss149111631	ENSMUSSNP4127597	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31918159					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51623204 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	1343 bp upstream
Rr366895	regulatory region 366895	886 bp upstream
Rr410721	regulatory region 410721	within coordinates
Rr410722	regulatory region 410722	853 bp proximal
Rr410723	regulatory region 410723	1354 bp proximal
Tssr6632	transcription start site region 6632	1307 bp upstream
Tssr6633	transcription start site region 6633	1368 bp upstream
Tssr11575	transcription start site region 11575	926 bp downstream
Tssr11576	transcription start site region 11576	1217 bp downstream