rs31918848 SNP Detail

Summary

• ID
  rs31918848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160940291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAACTTAC ATTTAATACT CAATTTCTTG
  GATTCTAACT TTCAAGGGAT GATGAATTAC CCCAACGACA TGTAATTCAC TTTAAGAAGT
  ATTATCagcc aagcatggca aggaatgctt gtaatcctag gacttaagag gctgagttac
  R
  tgggccaagg acagtcttgg ctacacagca aactcttgtc tcaaaGATAG TTTTATTTAA
  TCTAATTAAG Tatgtgccca aaatatacag tcaattataa tggttctaaa gaacttaaaa
  aatccacaca caccccaaac cacaaggtca                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45084477	mCV23480905	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss145906364	ENSMUSSNP6885272	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320080341	CHEV_1_163042852	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31918848					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160940291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klhl20	kelch-like 20			Intron
				Noncoding-Transcript-Variant
Rr421756	regulatory region 421756			1968 bp proximal