rs31920220 SNP Detail

Summary

• ID
  rs31920220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:117840683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC CTTGTACTCC ATAAACCCAC
  R
  TGTGCACCTC ATCATAGTCG TACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss46083825	mCV24813636	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss145772526	ENSMUSSNP6086375	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs31920220					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:117840683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19616	CpG island 19616	1428 bp proximal
Rr654423	regulatory region 654423	1217 bp proximal
Smg1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	within coordinates
Tssr74428	transcription start site region 74428	1902 bp downstream