rs31921327 SNP Detail

Summary

• ID
  rs31921327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91179762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT CGAAGAGTAG AGCAGGGTAC
  R
  CCCATCCTCT GCCTCCGATA AAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45085613	mCV25408062	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss144943454	ENSMUSSNP5471745	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss319839841	CHEV_1_93148617	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31921327					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91179762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	949 bp distal
Rr366958	regulatory region 366958	1794 bp downstream
Rr415587	regulatory region 415587	1464 bp distal
Rr415588	regulatory region 415588	341 bp distal
Rr415589	regulatory region 415589	within coordinates
Tssr8065	transcription start site region 8065	1824 bp downstream
Tssr8066	transcription start site region 8066	1730 bp downstream
Tssr8067	transcription start site region 8067	1660 bp downstream
Tssr8068	transcription start site region 8068	1532 bp downstream
Tssr8069	transcription start site region 8069	1454 bp downstream
Tssr12938	transcription start site region 12938	1965 bp upstream
Tssr12939	transcription start site region 12939	631 bp upstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates