rs31922579 SNP Detail

Summary

• ID
  rs31922579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:22383424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG CCCTGTCACT TAGCTTTAGT
  M
  AGTCTTCTTT TCTTAACCTA TAAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47604759	NES10288771	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	A	A	C	C	C	A	C	C	C
ss148021939	ENSMUSSNP5497121	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31922579					SNP	A	A	C	C	C	A	C	A	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47604759	NES10288771	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:22383424 () rs orientation: forward

Symbol	Name	Function Class
D5Mit72	DNA segment, Chr 5, Massachusetts Institute of Technology 72	1096 bp proximal
D5Mit227	DNA segment, Chr 5, Massachusetts Institute of Technology 227	1126 bp proximal
Gm54324	predicted gene, 54324	within coordinates
Reln	reelin	within coordinates
Rr117541	regulatory region 117541	1424 bp distal